RnoEX0082852 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114918488-114924355:+
Coord C1 exon
chr4:114918488-114918580
Coord A exon
chr4:114922703-114922777
Coord C2 exon
chr4:114924161-114924355
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTGCATCTTTTGCTTTGTAGTGA
3' ss Score
6.59
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CAGAAAGCCTTTCTGCAACCCAACGGGAGTGGAGCCAGGGGCTCTGGTCTTCCTGAGATTTGGAGCCTGGTGTCCACTGCTAAGAACACACAG
Seq A exon
TGATGAAAGTGGAAGAGAAGGCTGGGGTCAAAAAGCTGGAGCCCACAAGCTACAGGAGGAGACACCCAGAACAAG
Seq C2 exon
ATTTCCCTTCAATACATATTGGCTTTCCAGTCCCCGGTTACTCTCAAAGAAAAAGTGACTCAAAGGGACATCTTTCAGGTCTGCAAAGAGTCCAGTGGTCCCTGCAACCGGACAAATCTCAGCAGGACCTGGCTGGTCCAGACGGGATCAAGGCCAGCAGCCTGGGAGGCTCCGTGGATTTTACCAAAAGGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.960 C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGATTTGGAGCCTGGT
R:
GTCCTGCTGAGATTTGTCCGG
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]