BtaEX6043075 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10283282-10313322:+
Coord C1 exon
chr11:10283282-10283440
Coord A exon
chr11:10305679-10305750
Coord C2 exon
chr11:10313152-10313322
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTCATCTTTTACTTTATAGATA
3' ss Score
8.13
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAGCTGAATAAATCCTCCAATTGAGCACTGAATATTTGCTTTTCCTTAAAAAAATTATAGTGCATGTCATCTTGGTGCTTTGAGTTCATTGGTTTGGGGCACAAAACCTCACACCAAATGAACAGAAATGACAGGAGACTCATTCTTTCTGACACGCTG
Seq A exon
ATATGAAGGTGGAGGAGGAAGAGGCTGGGGTAGGGAAGCTGGACTATAGGAGGCGATGTCAGGATCAGGAAG
Seq C2 exon
ACTGCCGTTCCATTCACATCGGGCTTTCCGTTCCCAGTTACCCTCACAGGAAAAGAGACCAGAAGGGACAGCTTCCAGGCCTGCAAAAGGCCCACTGGGGCTTGCGGCCAGACAAGCCGCAGCAGGGGCTGGCCAGTGCGTGCGGCAGTGTGGACCGTGTCAGCAAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'1-1,'1-0,5-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.625 C2=0.888
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCATGTCATCTTGGTGCT
R:
GGAAGCTGTCCCTTCTGGTCT
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]