MmuEX1024059 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83219828-83226387:+
Coord C1 exon
chr6:83219828-83219920
Coord A exon
chr6:83224669-83224746
Coord C2 exon
chr6:83226196-83226387
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTCCATCTTTTCCTTTGTAGTGA
3' ss Score
8.24
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CAGAAAGCCTTCCTGCAACCCAACGGGAGCTGAGCCAGGGGCTCTGGTCTTCCTGCCATTTGGAGCCTGGTGTCCACTGCTAAGAACACACAG
Seq A exon
TGATGAAGGTGGACGAGGAGAAGGCTGGGGTCAAAAAGCTGGACCCCACAAGCTACAAGAGGAGACAGCCAGAACAAG
Seq C2 exon
ATTTCCCTTCAATTCATATTGGGTTTCCAGTTCCCAGTTACTCTCAAAGAAAAAGCGACTCAAAGGGACATCTTTCAGGCCTGCAAAAAGTCCAGTGGTCCCTGAAACCAGGCAAGCCTCAGCAGGAGCTGGCTGGCCCAGGGATCAGGGCCAGCAGCCAGGGAGGTGCCGTGGATTTTACCAAAAGGACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCTTCCTGCAACCCAA
R:
TTGCAGGCCTGAAAGATGTCC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types