HsaEX0059822 @ hg38
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74304489-74328186:-
Coord C1 exon
chr2:74328120-74328186
Coord A exon
chr2:74314945-74315025
Coord C2 exon
chr2:74304489-74304680
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCTTTTACTTTATAGTCA
3' ss Score
8.17
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACAGAGCAAGTGGTTCTGGCCTCCCTGGGATTTGGATCCTGGTTTCCAGAGCTAAGAACACAAAG
Seq A exon
TCATGAAGGTGAAGGAGGAGAAGGCTGGGGTAGGAAAGCTGGACCACACTAACCACAGGAGGAGATTTCCGGATCAGAAAG
Seq C2 exon
AATGCCCTCCTATCCACATTGGGCTTCCAGTACCCACTTACCCTCAAAGAAAAACTGACCAGAAGGGACATCTTTCAGGCCTGCAAAAAGTCCACTGGGGCCTGCGGCCAGACCAGCCACAGCAGGAACTGACTGGCCCAGGGAGTGGGGCAAGCAGCCAGGACAGCAGCATGGATCTTATCAGCAGGACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687_MULTIEX3-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCCCTGGGATTTGGATC
R:
GTCAGTTCCTGCTGTGGCTG
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development