HsaEX0059823 @ hg38
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74285773-74315025:-
Coord C1 exon
chr2:74314945-74315025
Coord A exon
chr2:74304489-74304680
Coord C2 exon
chr2:74285773-74285902
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGCCGTGTCCACAGAAT
3' ss Score
9.81
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCATGAAGGTGAAGGAGGAGAAGGCTGGGGTAGGAAAGCTGGACCACACTAACCACAGGAGGAGATTTCCGGATCAGAAAG
Seq A exon
AATGCCCTCCTATCCACATTGGGCTTCCAGTACCCACTTACCCTCAAAGAAAAACTGACCAGAAGGGACATCTTTCAGGCCTGCAAAAAGTCCACTGGGGCCTGCGGCCAGACCAGCCACAGCAGGAACTGACTGGCCCAGGGAGTGGGGCAAGCAGCCAGGACAGCAGCATGGATCTTATCAGCAGGACTC
Seq C2 exon
GGTCCCCAGCTGCTGAGCAGCTCCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTTACAGAGATGGATACTCTGCAGCATGACGGAGACCAGATGGAGTGGAAGGAGTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687_MULTIEX3-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.817
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAAGGTGAAGGAGGAGAAGG
R:
CTGGCTGACTCCTTCCACTCC
Band lengths:
210-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development