BtaEX0033344 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10305679-10327301:+
Coord C1 exon
chr11:10305679-10305750
Coord A exon
chr11:10313152-10313322
Coord C2 exon
chr11:10327172-10327301
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTCTGTGCCCACAGACT
3' ss Score
10.49
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATATGAAGGTGGAGGAGGAAGAGGCTGGGGTAGGGAAGCTGGACTATAGGAGGCGATGTCAGGATCAGGAAG
Seq A exon
ACTGCCGTTCCATTCACATCGGGCTTTCCGTTCCCAGTTACCCTCACAGGAAAAGAGACCAGAAGGGACAGCTTCCAGGCCTGCAAAAGGCCCACTGGGGCTTGCGGCCAGACAAGCCGCAGCAGGGGCTGGCCAGTGCGTGCGGCAGTGTGGACCGTGTCAGCAAGACAC
Seq C2 exon
GGTCTCCAGCTGCTGAGCAGCTCCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTGCAGCATGATGGAGACCAGATGGAGTGGAAGGAGTCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'5-2,'5-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.888 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGAAGGTGGAGGAGGAAGAGG
R:
CTGGCCGACTCCTTCCACTC
Band lengths:
202-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development