MmuEX6005152 @ mm9
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83174663-83190733:+
Coord C1 exon
chr6:83174663-83174740
Coord A exon
chr6:83176190-83176381
Coord C2 exon
chr6:83190604-83190733
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGCTGTTTCCACAGATT
3' ss Score
11.41
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
TGATGAAGGTGGACGAGGAGAAGGCTGGGGTCAAAAAGCTGGACCCCACAAGCTACAAGAGGAGACAGCCAGAACAAG
Seq A exon
ATTTCCCTTCAATTCATATTGGGTTTCCAGTTCCCAGTTACTCTCAAAGAAAAAGCGACTCAAAGGGACATCTTTCAGGCCTGCAAAAAGTCCAGTGGTCCCTGAAACCAGGCAAGCCTCAGCAGGAGCTGGCTGGCCCAGGGATCAGGGCCAGCAGCCAGGGAGGTGCCGTGGATTTTACCAAAAGGACTC
Seq C2 exon
GGTCTCCAGCTGCTGAGCAGCTGCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTACAGCATGATGGGGACCAGATGGAGTGGAAGGAGTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGGACGAGGAGAAGG
R:
GGCTGACTCCTTCCACTCCAT
Band lengths:
203-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: