DreEX0073080 @ danRer10
Exon Skipping
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:44977460-44997627:+
Coord C1 exon
chr10:44977460-44977533
Coord A exon
chr10:44980660-44980848
Coord C2 exon
chr10:44997501-44997627
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTGTCTGCTTGTAGAGT
3' ss Score
8.54
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGTCAGGATGGATCATGACTGGCAGGGCAGCAGGAGAAGTGGCCACCGCAGCAAACACAATGAAGATGAGGAAG
Seq A exon
AGTCCGTCTACATCGGCGTTCCTGTGCCCAGGAGCTACAGAAGGAAACGCAGACATCGCAAACACGCGTCACGACATTCCCACGATCGCGATAAACACCATAGTCGACATGAACACGCGGATCCAGAGGAAAACTGCGACCCTGAGGAGGCCGAGCAGGAGAACGAGCTCTCAGATGTCAACTCTACCG
Seq C2 exon
TGTCTCCTGCTGCAGAGCGACTGCGCCACATCCTCAGGGAAGATGACGAACCCACACCGACGCTCTTCACTGAGATGGACACACTGCAGCACGAGGGAGGAGAGATGGAGTGGAAAGAGTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGGATCATGACTGGCA
R:
GCGGACTCTTTCCACTCCATC
Band lengths:
195-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]