GgaEX7011571 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2857960-2862882:-
Coord C1 exon
chr22:2862789-2862882
Coord A exon
chr22:2862442-2862633
Coord C2 exon
chr22:2857960-2858089
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTCCCACCCCAGATT
3' ss Score
9.52
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CTCTCACCACACGGCAGGACCATGCTGGAGGATGAGGATGGGCTGAGCGAGCGGGGACTCAGCAGCTCGAGGAGGAGATACGATGATGAAGAAG
Seq A exon
ATTACCACTCCATCTACATCGGGGTGCCGGTGCCCCGGGGATACCGGAGGAAGCGGCGTCGGCGGCGATCCGCCTCCAGCCGGGACCGGACCAGCGAGAGCGAGCGGCACTACGAGCGGCAGGAGCGCTCCGACACCGACGACGGCGGCCACGGCTGCTACGAGAGCGGCAATGACAACGCCAGCAGGACCA
Seq C2 exon
TGTCACCGGCTGCTGAACGTCTCCGCTACATCCTGGGTGATGATGATGAGCCTCCCAACCCCACCCTCTTCACAGAGATGGACACACTGCAGCACGATGGGGAGGAGATGGAGTGGAAGGAGTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACCACACGGCAGGA
R:
GGCTGACTCCTTCCACTCCAT
Band lengths:
222-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]