RnoEX6014036 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114922703-114938853:+
Coord C1 exon
chr4:114922703-114922777
Coord A exon
chr4:114924161-114924355
Coord C2 exon
chr4:114938724-114938853
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGCTGTTTCCACAGATT
3' ss Score
10.89
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
TGATGAAAGTGGAAGAGAAGGCTGGGGTCAAAAAGCTGGAGCCCACAAGCTACAGGAGGAGACACCCAGAACAAG
Seq A exon
ATTTCCCTTCAATACATATTGGCTTTCCAGTCCCCGGTTACTCTCAAAGAAAAAGTGACTCAAAGGGACATCTTTCAGGTCTGCAAAGAGTCCAGTGGTCCCTGCAACCGGACAAATCTCAGCAGGACCTGGCTGGTCCAGACGGGATCAAGGCCAGCAGCCTGGGAGGCTCCGTGGATTTTACCAAAAGGATTC
Seq C2 exon
GGTCTCCAGCTGCTGAGCAGCTACAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTACAGCATGATGGGGACCAGATGGAGTGGAAGGAATCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'1-4,'1-2,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.833 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGTGGAAGAGAAGGCTGG
R:
CTGGCTGATTCCTTCCACTCC
Band lengths:
202-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]