MmuEX6005152 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83224669-83240739:+
Coord C1 exon
chr6:83224669-83224746
Coord A exon
chr6:83226196-83226387
Coord C2 exon
chr6:83240610-83240739
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGCTGTTTCCACAGATT
3' ss Score
11.41
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
TGATGAAGGTGGACGAGGAGAAGGCTGGGGTCAAAAAGCTGGACCCCACAAGCTACAAGAGGAGACAGCCAGAACAAG
Seq A exon
ATTTCCCTTCAATTCATATTGGGTTTCCAGTTCCCAGTTACTCTCAAAGAAAAAGCGACTCAAAGGGACATCTTTCAGGCCTGCAAAAAGTCCAGTGGTCCCTGAAACCAGGCAAGCCTCAGCAGGAGCTGGCTGGCCCAGGGATCAGGGCCAGCAGCCAGGGAGGTGCCGTGGATTTTACCAAAAGGACTC
Seq C2 exon
GGTCTCCAGCTGCTGAGCAGCTGCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTACAGCATGATGGGGACCAGATGGAGTGGAAGGAGTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'1-6,'1-1,3-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGGACGAGGAGAAGG
R:
GGCTGACTCCTTCCACTCCAT
Band lengths:
203-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types