GgaEX1053600 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39058439-39102309:-
Coord C1 exon
chr2:39102262-39102309
Coord A exon
chr2:39069770-39069851
Coord C2 exon
chr2:39058439-39058582
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTTCTTCTTTAGGGT
3' ss Score
13.32
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGGAAGAGGAGCGGGCCGGCGAGCAGATGAGACCGTTGCTCACCACG
Seq A exon
GGTCATGATGAGGAAGCTGTCGTGGATATGGGCAAAATCAGCTCTACTATCAATACAAACTTTGAGAAAGAAGAACTAGAGA
Seq C2 exon
GCCACAGAGCTGTTTATATTGGCGTTCATGTCCCATTTGGAAAGCAGGGTCGTCGACGGCATAGACATCGTGGGCATAGACATCACAGAAGAAAAAAAGAAAAAGAAACTGATAGAGAAGATGGCAGAGAATCTCCATCGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'0-11,'0-5,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.893 C2=0.694
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGAGACCGTTGCTCACC
R:
CGTACGATGGAGATTCTCTGCC
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]