MmuEX0043419 @ mm10
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14703025-14733868:+
Coord C1 exon
chr14:14703025-14703280
Coord A exon
chr14:14729202-14729283
Coord C2 exon
chr14:14733722-14733868
Length
82 bp
Sequences
Splice sites
3' ss Seq
GGAGAATGCCTTGTTTTTAGGGT
3' ss Score
3.74
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGGCGCCGCTGCCTCCTCCGCGCCGCGTCCTCTGCCCGTCTCAGTCCTCGCGGCACGCCGTTGCCTCTCTCTCCCGGAGAACGTCCCGCGCTCGCAGCGGTCGCCGCACTCCGGGGCCAGCTCTCGGCGGCCAGCGCTCCGCACAGGGTCTCCCTCCGCGTGCCCGTCTCTGCTGCGGTCGCGGCCTCTCAGAGCTCCGGGGCGGGCCATGGAGGCAGACGGGGCCGGCGAGCAGATGAGACCGCTACTCACGCGG
Seq A exon
GGTCCAGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAA
Seq C2 exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.893 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000057015fB16979
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGAGACCGCTACTCA
R:
AGAAGGAGATTCCCGTCCATCT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types