BtaEX6093067 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1828127-1877841:-
Coord C1 exon
chr22:1877794-1877841
Coord A exon
chr22:1836429-1836510
Coord C2 exon
chr22:1828127-1828273
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGAGAATCATTTCTTTTTAGGGT
3' ss Score
6.62
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGGAGGCGGACGGGACCGGCGAGCAGATGAGACCGCTCCTCACCCGG
Seq A exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACCAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAGA
Seq C2 exon
GCCATCGAGCTGTGTACATCGGCGTTCACGTCCCGTTTAGTAAAGAGAGTCGCCGGCGTCACAGGCATCGCGGACACAAACATCACCACCGGAGGAGGAAAGACAAGGACTCGGACAGAGAGGACGGACGGGAGTCTCCTTCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'0-4,'0-0,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.907 C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGACCGCTCCTCACC
R:
TAAGAAGGAGACTCCCGTCCG
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]