DreEX0073100 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42831082-42866306:-
Coord C1 exon
chr16:42866191-42866306
Coord A exon
chr16:42844981-42845062
Coord C2 exon
chr16:42831082-42831225
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCGATTCAGGGC
3' ss Score
12.32
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGGGGCATTTCGAAATATCATATTCAAATCAGTCTCCGGCGAGGGACGGAAGAAGTCCCCAGTTTGAACAAATGGAGGAAGATAGCAGCGAACAGATGAAACCTCTTCTAACCACA
Seq A exon
GGCAATGATGATGAAGCTGTTGTTGACCAGGGGAAAACCAGCTCTAACATTCACACAAACTTTGAAAAAGAGGAACTAGAAA
Seq C2 exon
GTCACAGAGCAGTTTATGTTGGCGTACATGTACCTTTAGGAAGACAAAGCAGAAGGAGACACCGCCACCGTGGTCATAAGCACCATCGGAAAAGGAAAGACAGATGCTCTGAGCGAGAGGACGGCAGAGATTCACCAACGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.929 C2=0.917
Domain overlap (PFAM):
C1:
PF079317=CPT=PU(33.6=92.3)
A:
PF079317=CPT=FE(25.2=100)
C2:
PF079317=CPT=PD(39.3=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAATCAGTCTCCGGCGAG
R:
ATGGTGCTTATGACCACGGTG
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]