GgaEX1053600 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38475003-38519434:-
Coord C1 exon
chr2:38519320-38519434
Coord A exon
chr2:38486624-38486705
Coord C2 exon
chr2:38475003-38475146
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTTTCTTCTTTAGGGT
3' ss Score
13.32
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGCAGCGCCCGGCTCCCGCCCGCCTTCCGCTTCTCGTCTCGCTGCCGGCGAACTCGGCGGGGCCGCGATGGAAGAGGAGCGGGCCGGCGAGCAGATGAGACCGTTGCTCACCACG
Seq A exon
GGTCATGATGAGGAAGCTGTCGTGGATATGGGCAAAATCAGCTCTACTATCAATACAAACTTTGAGAAAGAAGAACTAGAGA
Seq C2 exon
GCCACAGAGCTGTTTATATTGGCGTTCATGTCCCATTTGGAAAGCAGGGTCGTCGACGGCATAGACATCGTGGGCATAGACATCACAGAAGAAAAAAAGAAAAAGAAACTGATAGAGAAGATGGCAGAGAATCTCCATCGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'0-8,'0-4,3-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.614 C2=0.694
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGAGACCGTTGCTCACC
R:
CGTACGATGGAGATTCTCTGCC
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]