HsaEX0059834 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27490142-27525838:-
Coord C1 exon
chr3:27525570-27525838
Coord A exon
chr3:27493908-27493989
Coord C2 exon
chr3:27490142-27490288
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGAGAATAATTTGTTTTTAGGGT
3' ss Score
5.6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCTACTAAAGCCAGCCCAGCAGTCGCAGCGCGCACACGCACGCCCCGCGTCTCCCGCGCCCGGCGCCCGGCTCTCCCCACGCGCGCACACCTCGCGCACGGACGCACCCACGTTTGTCCTCGCGCGCCGGGGGCTCGGCGGCGGCGGCAGGGGCAGCGGCAGAAGCAGGCAGACCGCGCGGGGCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGG
Seq A exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAAA
Seq C2 exon
GTCATAGAGCTGTATATATTGGTGTTCACGTCCCGTTTAGTAAAGAGAGTCGTCGGCGTCATAGGCATCGCGGACACAAACATCACCACCGGAGAAGAAAAGATAAAGAATCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'0-7,'0-6,8-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.860 C2=0.704
Domain overlap (PFAM):
C1:
NO
A:
PF079317=CPT=PU(32.4=85.7)
C2:
PF079317=CPT=FE(66.2=100)
Other Inclusion Isoforms:
ENSP00000295736, ENSP00000295736f379A, ENSP00000295736f381A, ENSP00000388703, ENSP00000390394, ENSP00000390394f380A, ENSP00000394252, ENSP00000395336, ENSP00000401949, ENSP00000406605f377A, ENSP00000406804, ENSP00000407304, ENSP00000407382, ENSP00000408323, ENSP00000409418, ENSP00000414797, ENSP00000416368
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGAGACCGCTACTCA
R:
AGAAGGAGATTCCCGTCCATCT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)