HsaEX0059834 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27448651-27484420:-
Coord C1 exon
chr3:27484079-27484420
Coord A exon
chr3:27452417-27452498
Coord C2 exon
chr3:27448651-27448797
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGAGAATAATTTGTTTTTAGGGT
3' ss Score
5.6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTCTCCTCCTTCCCGCTCGGTCCGCCGGTTCGCTCAGTTCTAGCTTCAGGTTCCACGCCGCGGCCTCGCTCTCCTACTAAAGCCAGCCCAGCAGTCGCAGCGCGCACACGCACGCCCCGCGTCTCCCGCGCCCGGCGCCCGGCTCTCCCCACGCGCGCACACCTCGCGCACGGACGCACCCACGTTTGTCCTCGCGCGCCGGGGGCTCGGCGGCGGCGGCAGGGGCAGCGGCAGAAGCAGGCAGACCGCGCGGGGCAGTACCGTAGCGGCCGTCACGGGCTGGCCGGCCGGCCATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGG
Seq A exon
GGTCCTGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGAAA
Seq C2 exon
GTCATAGAGCTGTATATATTGGTGTTCACGTCCCGTTTAGTAAAGAGAGTCGTCGGCGTCATAGGCATCGCGGACACAAACATCACCACCGGAGAAGAAAAGATAAAGAATCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'0-7,'0-6,15-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.872 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000425128fB6497
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGAGACCGCTACTCA
R:
AGAAGGAGATTCCCGTCCATCT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development