RnoEX0082857 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11888178-11912806:-
Coord C1 exon
chr15:11912671-11912806
Coord A exon
chr15:11890229-11890310
Coord C2 exon
chr15:11888178-11888324
Length
82 bp
Sequences
Splice sites
3' ss Seq
GGAGAATGCCTTGTTTTTAGGGT
3' ss Score
3.74
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTCTCCGCGGCCAGCGCTCCGCACAGGGTCGCCCTCCGCGTGCCCGTCTCTGCCGCGGTCGCGGCCTCTCAGAGCTCCCAGGCGGGCCATGGAGGCAGACGGGGCCGGCGAGCAGATGAGACCGCTACTCACGCGG
Seq A exon
GGTCCCGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACCGTGAACACCAAGTTTGAAAAAGAAGAATTAGAGA
Seq C2 exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCGTTTAGTAAAGAGAGTCGTCGGCGTCACAGGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAGGAAGATGGACGGGAGTCTCCTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'0-2,'0-0,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.898 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGAGACCGCTACTCA
R:
GAAGGAGACTCCCGTCCATCT
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]