MmuEX0043419 @ mm9
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15535539-15566382:+
Coord C1 exon
chr14:15535539-15535794
Coord A exon
chr14:15561716-15561797
Coord C2 exon
chr14:15566236-15566382
Length
82 bp
Sequences
Splice sites
3' ss Seq
GGAGAATGCCTTGTTTTTAGGGT
3' ss Score
3.74
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGGCGCCGCTGCCTCCTCCGCGCCGCGTCCTCTGCCCGTCTCAGTCCTCGCGGCACGCCGTTGCCTCTCTCTCCCGGAGAACGTCCCGCGCTCGCAGCGGTCGCCGCACTCCGGGGCCAGCTCTCGGCGGCCAGCGCTCCGCACAGGGTCTCCCTCCGCGTGCCCGTCTCTGCTGCGGTCGCGGCCTCTCAGAGCTCCGGGGCGGGCCATGGAGGCAGACGGGGCCGGCGAGCAGATGAGACCGCTACTCACGCGG
Seq A exon
GGTCCAGATGAAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAA
Seq C2 exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'0-3,'0-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.893 C2=0.748
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGATGAGACCGCTACTCA
R:
AGAAGGAGATTCCCGTCCATCT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: