HsaEX6066576 @ hg19
Exon Skipping
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:11034]
Coordinates
chr12:51818594-51844806:+
Coord C1 exon
chr12:51818594-51818819
Coord A exon
chr12:51834492-51834573
Coord C2 exon
chr12:51844660-51844806
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTGTGTTTAAACAGAGA
3' ss Score
7.79
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTGGTTGCGGCGGATGCCTCGCGGGCCGGTGGCTATGGAGGCGGCGGCGGTTGATGGTTGACCGTTGGCTCCGGGGTGGGGGTCGCCGTTCGAGTGATCTGCTCAGACCCGACCAGAGGGCGCGGGCTGCTGATGCTTGGCTTGGAGCCCGTGGGGGAGACCTAGTTCGGCTCCGCCATGCCGGCCGCCGGGAGTAACGAGCCGGACGGCGTCCTCAGCTATCAG
Seq A exon
AGACCAGATGAAGAAGCTGTGGTGGATCAGGGTGGGACCAGTACAATTCTCAACATTCACTATGAAAAAGAAGAGCTGGAAG
Seq C2 exon
GTCACAGAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAGAGCCATCGGCATCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGGCGGGGCAAAGGAGCCAGCCAGGGGGAGGAAGGCCTGGAAGCCCTGGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.673 C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCGAGTGATCTGCTCAG
R:
GGCATCCGAACTCCCACATAC
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)