RnoEX6017047 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48096954-48130852:+
Coord C1 exon
chr3:48096954-48097103
Coord A exon
chr3:48106099-48106180
Coord C2 exon
chr3:48130706-48130852
Length
82 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCCTCACACTATAGAGA
3' ss Score
5.95
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGTAGATGCTGAGAGACAGAGACGGCTGAGCTTGTTTATTTACTTATTCCTTTGTAAGACAGGAAATGTGTGATCTCGCAGGGATTTCTGGAAATAGAAAGGTCATGCAGCCTGGAACCTGTGAGCATTTCCAGTCTCTAGGTCAAGAG
Seq A exon
AGAAATGATGAAGAAGCCGTTGTGGATAGAGGTGGAACACGTTCTATTCTCAAAACACATTTTGAAAAAGAAGATTTAGAAG
Seq C2 exon
GTCATCGAACATTATTTATTGGAGTTCATGTGCCGCTTGGTGGAAGAAAGAGCCATCGTCGTCACAGGCATCGAGGCCATAAGCACAGAAAGCGGGACAGAGAGAGAGATTCAGGACTAGAGGATGGAGGAGAGTCACCTTCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'3-11,'3-9,4-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.723 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGACAGAGACGGCTGAG
R:
AAGCGGCACATGAACTCCAAT
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]