GgaEX6044073 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11983386-11985240:+
Coord C1 exon
chr8:11983386-11983439
Coord A exon
chr8:11984326-11984433
Coord C2 exon
chr8:11985151-11985240
Length
108 bp
Sequences
Splice sites
3' ss Seq
GAGTTTACCTTTGTGCTTAGGGT
3' ss Score
7.25
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGATTTCAAGGAAAAACTGGTCCTCCTGGTCCTGGTGGGGTTGTTGGCCCTCAG
Seq A exon
GGTCCTACTGGTGAGACTGGCCCAATTGGTGAAAGAGGTCATCCAGGTCCTCCTGGCCCACCAGGTGAACAAGGCCTCCCAGGTGCTGCAGGAAAAGAAGGTGCTAAG
Seq C2 exon
GGTGACCCAGGTCCTCAAGGTATTCCTGGGAAAGATGGACCAGCAGGTCTTCGTGGTTTCCCTGGAGAGAGAGGCCTTCCAGGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.3=100),PF0139113=Collagen=PU(16.9=61.1)
A:
PF0139113=Collagen=PD(8.3=13.9),PF0139113=Collagen=FE(53.8=100)
C2:
PF0139113=Collagen=PD(24.6=53.3),PF0139113=Collagen=PU(42.0=96.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTCAAGGAAAAACTGGTCCT
R:
CTCCTGGAAGGCCTCTCTCTC
Band lengths:
139-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]