RnoEX0022763 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216994073-216995860:+
Coord C1 exon
chr2:216994073-216994126
Coord A exon
chr2:216995273-216995380
Coord C2 exon
chr2:216995771-216995860
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCTGTGCTTGTCCGATTTAGGGA
3' ss Score
8.93
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
GGATTTCAAGGAAAGACCGGTCCCCCTGGGCCAGGAGGTGTGGTAGGACCACAG
Seq A exon
GGACCAACTGGTGAGACTGGCCCGATAGGTGAACGTGGGCATCCTGGCACTCCTGGTCCTCCGGGCGAGCAAGGACTTCCTGGTGCTGCAGGGAAAGAAGGTGCAAAG
Seq C2 exon
GGTGATCCTGGTCCTCAAGGTATCTCAGGGAAAGATGGACCAGCAGGAATCCGTGGTTTCCCAGGTGAAAGAGGCCTTCCTGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'44-47,'44-46,45-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAAGGAAAGACCGGTCCC
R:
GCTCCAGGAAGGCCTCTTTCA
Band lengths:
138-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]