GgaEX6047084 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE22C19W28_E50C23:849927-850822:-
Coord C1 exon
chrE22C19W28_E50C23:850734-850822
Coord A exon
chrE22C19W28_E50C23:850448-850605
Coord C2 exon
chrE22C19W28_E50C23:849927-850014
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTTTATTTGTTGTGCACAGGCA
3' ss Score
8.91
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
CCCAAACGCTCATCCCCCATCCTTCTCCCACCACCATAGAAGCTAAAAATGGGGTGAGCCATGACACCAGCCCCATGGATTTAAGCAAG
Seq A exon
GCAGAGCTGCACTTCATGAAGAAAATTCCCACCGGGGCTGAAGCAGCAAATGTGCTGGTGGGAGAGTTGGATTTCCTTCAGCAGCCCATCATGGCCTTTGCCCGCCTCAGCCCGGCCGTCCTCCTCTCGGGCATGACAGAAGTCCCCATCCCAACCAG
Seq C2 exon
GTTTCTGTTTGTGTTGTTGGGACCAGAAGGAAAAGCCCATCAGTACCACGAGATCGGCAGGTCCATGGCCACGCTCATGACGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.7=100)
A:
PF075658=Band_3_cyto=FE(21.1=100)
C2:
PF075658=Band_3_cyto=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCTCATCCCCCATCCTT
R:
CATCCGTCATGAGCGTGGC
Band lengths:
172-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]