RnoEX6034122 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142433751-142435389:+
Coord C1 exon
chr7:142433751-142433842
Coord A exon
chr7:142434534-142434691
Coord C2 exon
chr7:142435302-142435389
Length
158 bp
Sequences
Splice sites
3' ss Seq
AGGTTCTTTTGCCTTTTTAGGCG
3' ss Score
8.88
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGCAAACCGTGTCTCCTCAGTCTGCTCCAGCTACCAACCTTGAAGTGAAGAATGGTGTGAACTGTGAACACAGCCCTGTGGATCTAAGCAAG
Seq A exon
GCGGACCTCCATTTCATGAAAAAGATTCCCGCAGGGGCAGAGGCCTCCAATGTCCTGGTTGGCGAGGTGGACACTCTGGACCGGCCCATCGTCGCTTTCGTGAGGCTCTCCCCGGCCGTGCTCCTCTCTGGACTGACAGAAGTGCCCATCCCAACGAG
Seq C2 exon
GTTTTTGTTTATCTTACTGGGTCCGGTAGGAAAAGGGCAGCAGTACCATGAGATTGGCAGATCCATGGCCACCATCATGACGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'10-7,'10-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.5=100)
A:
PF075658=Band_3_cyto=FE(20.0=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACCGTGTCTCCTCAGTC
R:
CTCATCCGTCATGATGGTGGC
Band lengths:
179-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]