GgaEX7011990 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:864090-864994:-
Coord C1 exon
chrLGE22C19W28_E50C23:864906-864994
Coord A exon
chrLGE22C19W28_E50C23:864620-864777
Coord C2 exon
chrLGE22C19W28_E50C23:864090-864177
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTTTATTTGTTGTGCACAGGCA
3' ss Score
8.91
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
CCCAAACACTCATCCCCCATCCTTCTCCCACCACCATAGAAGCTAAAAATGGGGTGAGCCATGACACCAGCCCCATGGATTTAAGCAAG
Seq A exon
GCAGAGCTGCACTTCATGAAGAAAATTCCCACCGGGGCTGAAGCAGCAAATGTGCTGGTGGGAGAGTTGGATTTCCTTCAGCAGCCCATCATGGCCTTTGCCCGCCTCAGCCCGGCCGTCCTCCTCTCGGGCATGACAGAAGTCCCCATCCCAACCAG
Seq C2 exon
GTTTCTGTTTGTGTTGTTGGGACCAGAAGGAAAAGCCCATCAGTACCACGAGATCGGCAGGTCCATGGCCACGCTCATGACGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.7=100)
A:
PF075658=Band_3_cyto=FE(21.1=100)
C2:
PF075658=Band_3_cyto=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAACACTCATCCCCCATC
R:
GTCATGAGCGTGGCCATGG
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]