MmuEX6056566 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100788160-100789922:+
Coord C1 exon
chr15:100788160-100788245
Coord A exon
chr15:100789010-100789167
Coord C2 exon
chr15:100789835-100789922
Length
158 bp
Sequences
Splice sites
3' ss Seq
AGGTTCTTGTGCGTTTCTAGGTG
3' ss Score
9.5
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCAAACGGTGTCTCCTCAGTCAGCTACAAACCTTGAAGTGAAGAATGGTGTGAACTGTGAGCACAGCCCTGTGGATCTAAGCAAG
Seq A exon
GTGGATCTTCACTTCATGAAAAAAATTCCCACGGGGGCAGAGGCCTCCAATGTCCTGGTGGGAGAGGTGGATACGCTGGACCGGCCCATCGTGGCCTTCGTGAGGCTCTCCCCGGCTGTGCTGCTCTCTGGCCTGACGGAAGTGCCCATCCCAACGAG
Seq C2 exon
GTTTTTGTTTATCTTACTGGGCCCAGTGGGAAAAGGGCAGCAGTACCATGAGATTGGCAGGTCCATGGCCACCATCATGACGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'16-26,'16-17,20-26=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=0.005 C2=0.033
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.9=100)
A:
PF075658=Band_3_cyto=FE(20.2=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGGTGTCTCCTCAGTC
R:
CTCGTCCGTCATGATGGTGG
Band lengths:
173-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types