DreEX6023335 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40385793-40387829:+
Coord C1 exon
chr6:40385793-40385881
Coord A exon
chr6:40387371-40387528
Coord C2 exon
chr6:40387742-40387829
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATGACCATCTTCCTCCATAGGTG
3' ss Score
11.4
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTCTTGCAACATCTCCTCAGCCTCCAACAACAAGCACAGATATAAAGAACGGAGCAACGTCAGAGATTGGCCAGATGGATCTCAGCAAG
Seq A exon
GTGGACACACATTTCATGAAAAAGATTCCTACTGGAGCAGAAGCTTCCAATGTGCTGGTTGGAGAGCTGGACTTTTTAGAGAGATCCATCGTTGCATTTGTTCGCTTGTCTCCAGCTGTACTGCTGACTGGACTCACTGAAGTTCCCATTCCCACAAG
Seq C2 exon
ATTCTTGTTCATTTTGCTTGGTCCTGATGGAAAAGCCCAGCAGTACCATGAAATTGGTCGCTCCATGGCCACCATCATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.2=100)
A:
PF075658=Band_3_cyto=FE(20.1=100)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCAACATCTCCTCAGCCT
R:
CTGTCATGATGGTGGCCATGG
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]