BtaEX6020633 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28507409-28509950:-
Coord C1 exon
chr5:28509839-28509950
Coord A exon
chr5:28508692-28508849
Coord C2 exon
chr5:28507409-28507496
Length
158 bp
Sequences
Splice sites
3' ss Seq
GGGTGCTTTTAAATTTTCAGGTG
3' ss Score
8.99
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTCGATTTTTCTCCAAATAGGTCAAACTGTGTCTCCTCAGTCCATTCCAACCACAAGTCTTGAAGTAAAGAATGGAGTGAATTGTGAACACAGTCCAGTGGATTTAAGCAAG
Seq A exon
GTGGACCTTCATTTTATGAAGAAGATTCCCACTGGGGCAGAGGCCTCGAATGTCCTGGTTGGAGAGGTGGACTCTCTGGACCGCCCCATTGTCGCCTTTGTGAGGCTGTCTCCAGCTGTCCTTCTCTCAGGCCTGACAGAAGTGCCCATCCCAACAAG
Seq C2 exon
GTTTTTGTTTATCCTATTGGGTCCAGTAGGGAAAGGTCAGCAGTATCATGAGATTGGCAGATCCATGGCCACCATCATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'12-12,'12-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.1=100)
A:
PF075658=Band_3_cyto=FE(14.1=100)
C2:
PF075658=Band_3_cyto=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCCAAATAGGTCAAACTGTGT
R:
CTCATCTGTCATGATGGTGGCC
Band lengths:
194-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]