HsaEX6066570 @ hg19
Exon Skipping
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:11034]
Coordinates
chr12:51852343-51855075:+
Coord C1 exon
chr12:51852343-51852434
Coord A exon
chr12:51853735-51853892
Coord C2 exon
chr12:51854988-51855075
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTGGACTTTCAGGTA
3' ss Score
10.02
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCAAACCGTGTCTCCTCAGTCTGTTCCAACTACAAATCTTGAAGTAAAAAATGGAGTGAATTGTGAACATAGTCCTGTGGATTTAAGCAAG
Seq A exon
GTAGACCTTCATTTCATGAAAAAAATTCCTACTGGGGCCGAGGCCTCCAATGTCCTGGTTGGAGAGGTGGATATTTTGGACCGTCCCATTGTTGCCTTTGTGAGGCTGTCTCCAGCTGTTCTTCTCTCAGGCCTAACAGAAGTGCCAATCCCAACAAG
Seq C2 exon
ATTTTTGTTTATCTTATTGGGTCCAGTAGGGAAAGGTCAGCAGTACCATGAGATTGGCAGATCCATGGCCACCATCATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.5=100),PF120133=DUF3505=FE(37.0=100)
A:
PF075658=Band_3_cyto=FE(20.0=100),PF120133=DUF3505=PD(1.2=1.9)
C2:
PF075658=Band_3_cyto=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAACCGTGTCTCCTCAGT
R:
CATCTGTCATGATGGTGGCCA
Band lengths:
178-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)