GgaEX6047343 @ galGal3
Exon Skipping
Gene
ENSGALG00000003215 | PEF1
Description
NA
Coordinates
chrUn_random:12596755-12597424:-
Coord C1 exon
chrUn_random:12597304-12597424
Coord A exon
chrUn_random:12597069-12597224
Coord C2 exon
chrUn_random:12596755-12596898
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCGGTGCCGTTTCTCCGCAGGCG
3' ss Score
11.46
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGCTATCCCGGCGCGGGCCAGGCCGGGCCCTACTCCGGAGGTCCTTACGGCGGCGGCGCGGCCCCCGGGCAGCCCTACGGAGCGCCCCCGGCGGGACCGTACGGAGGAGCCGCTCCCGGAG
Seq A exon
GCGGTGCCCCCCAGGGGGTGGACCCCGAGGCCTTCTCCTGGTTCCAGGCGGTGGACGCTGACCGCAGCGGTTACATCTCGGTGAAGGAGCTGAAACAGGCGCTGCTCAACTCCAACTGGTCGGCGTTCAACGACGAGACCTGCCTGCTGATGATCA
Seq C2 exon
ACATGTTTGACAGGACCAGGTCGGGACGCATAGATGTGTACGGCTTCGCAGCTCTGCTGCGCTTCATCCAGCAGTGGAAGAACCTCTTCCAGCAGTACGACAGGGACCAGTCGGGCTCCATCAGCTTCAGTGAGCTCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003215-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.226 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.2=12.2)
A:
PF134991=EF-hand_7=PU(71.4=94.3)
C2:
PF134991=EF-hand_7=PD(27.1=38.8),PF0003627=EF-hand_1=PU(82.8=49.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGTCCTTACGGCGG
R:
CTTGCTGGAGCTCACTGAAGC
Band lengths:
230-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]