BtaEX6012392 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010378 | PEF1
Description
Bos taurus penta-EF-hand domain containing 1 (PEF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001097992]
Coordinates
chr2:122630771-122636044:+
Coord C1 exon
chr2:122630771-122631080
Coord A exon
chr2:122635260-122635415
Coord C2 exon
chr2:122635901-122636044
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTGGCACCCCTTCCTGCAGGTG
3' ss Score
8.72
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGCTGCCCAGGAGCTGGGGGACAAGCACCCGGAGCCCCTCCGGGTAGCTACTACCCCGGACCCCCCCACGGTGGAGGGCAGTATGGGAGCGGGGTACCCCCTGGTGGCGGATATGGAGGAGGTCCTGCCCCTGGAGGGCCTTACGGACCACCAGCTGGTGGAGGACCCTATGGACACCCCCACCCTGGGGGGCTCCCTTCTGGAACTCCAGGAGGACCCTATGGTGGCGCAGCCCCAGGGGGCCCCTATGGTACACCACCTCCAAATTCCTTCGGTGCCGGACCTTATGGACAGGGACCACCTCCTCCAG
Seq A exon
GTGGCGTCCCTCCCAATGTGGATCCCGAGGCTTACTCCTGGTTCCAGTCAGTGGACTCTGATCACAGTGGCTACATCTCCATCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCGTTCAATGACGAGACGTGCCTTATGATGATAA
Seq C2 exon
ACATGTTTGACAAGACCAAGTCAGGCCGCATCGACGTCTACGGTTTCTCCGCCCTGTGGAAGTTCATCCAGCAGTGGAAGAACCTCTTCCAGCAGTATGACCGGGACTGCTCGGGCTCCATCAGCTACACAGAGCTGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010378-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.264 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(70.1=88.7)
C2:
PF134991=EF-hand_7=PD(28.4=38.8),PF134991=EF-hand_7=PU(25.3=49.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTCCAGGAGGACCCTA
R:
GCAGCTCTGTGTAGCTGATGG
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]