MmuEX6096417 @ mm10
Exon Skipping
Gene
ENSMUSG00000028779 | Pef1
Description
penta-EF hand domain containing 1 [Source:MGI Symbol;Acc:MGI:1915148]
Coordinates
chr4:130121168-130125797:+
Coord C1 exon
chr4:130121168-130121441
Coord A exon
chr4:130125063-130125218
Coord C2 exon
chr4:130125654-130125797
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTCACATCCCTTTCTCCAGGTG
3' ss Score
8.87
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
AGTTGCCCAGGAGCTGCAGGACAGGTGCCTGGAGTACCCCCGGGGGGCTATTATCCTGGTCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACTGCCCCCAGGTGGTGGCTATGGAGCTCCTGCCCCTGGAGGACCCTATGGATACCCCAGTGCTGGAGGAGTCCCCTCGGGAACTCCAAGTGGACCATATGGCGGTATACCTCCAGGGGGTCCCTATGGTCAGCTACCTCCAGGGGGTCCCTACGGTACCCAGCCTGGACATTATGGACAGG
Seq A exon
GTGGTGTCCCCCCGAATGTGGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGATCACAGTGGCTATATCTCCCTCAAGGAGCTGAAGCAGGCCCTAGTCAACTCCAACTGGTCCTCATTCAATGACGAGACATGCCTCATGATGATAA
Seq C2 exon
ACATGTTTGACAAGACCAAGTCTGGCCGCATTGATGTCGCCGGCTTCTCAGCCTTATGGAAATTCCTCCAGCAGTGGAGGAACCTCTTTCAGCAGTATGACCGGGACCGCTCGGGCTCCATTAGCTCCACAGAGCTGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028779-'14-22,'14-17,20-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(71.4=94.3)
C2:
PF134991=EF-hand_7=PD(27.1=38.8),PF134991=EF-hand_7=PU(26.0=51.0)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCTGGTCCTCCCCATGG
R:
GGCCAGACTTGGTCTTGTCAA
Band lengths:
251-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types