RnoEX0064806 @ rn6
Exon Skipping
Gene
ENSRNOG00000013972 | Pef1
Description
penta-EF hand domain containing 1 [Source:RGD Symbol;Acc:1359536]
Coordinates
chr5:148337037-148341633:+
Coord C1 exon
chr5:148337037-148337334
Coord A exon
chr5:148340907-148341062
Coord C2 exon
chr5:148341490-148341633
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTCACATCCCTTTCTCCAGGTG
3' ss Score
8.87
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
AGTTACCCAGGAGCTGCAGGACAGGTACCTGGACCACACCCCGGTGGCTACTATCCTGGACCTCCCCATGGTGGGGGCCAGTATGGCAGTGGATTCCCCCCTGGTGGTTACGGAGCTCCTGCCCCTGGAGGACCCTATGGCTACCCCAGTGCTGGAGGAACCCCCTCTGGAACTCCAGGCGGACCATATGGCGGTGGACCTCCAGGAGGCCCCTATGGTGGTGGACCTCCAGGAGGCCCCTATGGTCAGGCACATCCAAGTCCCTATGGTACCCAGCCGCCTGGACCTTATGGACAGG
Seq A exon
GTGGCGTCCCCCCCAATGTCGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGACCACAGTGGCTATATCTCACTCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCATTCAATGATGAGACGTGCCTCATGATGATAA
Seq C2 exon
ACATGTTTGACAAGACCAAGACTGGCCGAATTGATGTCGTCGGCTTCTCAGCCTTATGGAAGTTCCTCCAGCAGTGGAAGAACCTCTTTCAGCAGTATGACCGGGACCACTCGGGATCCATCAGCTCCACAGAGCTGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013972-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.245 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(71.4=94.3)
C2:
PF134991=EF-hand_7=PD(27.1=38.8),PF134991=EF-hand_7=PU(26.0=51.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACCCTATGGCTACC
R:
TCTTCCACTGCTGGAGGAACT
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]