DmeEX0001274 @ dm6
Exon Skipping
Gene
FBgn0033529 | CG17765
Description
This gene is referred to in FlyBase by the symbol DmelCG17765 (FBgn0033529). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 2R:10480163..10481886. Its molecular function is described by: calcium ion binding. The biological processes in which it is involved are not known. 7 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 06-12 hour embryonic stages.
Coordinates
chr2R:10480163-10481169:+
Coord C1 exon
chr2R:10480163-10480263
Coord A exon
chr2R:10480323-10480542
Coord C2 exon
chr2R:10481090-10481169
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTACTACCGTTTATCCACAGGGA
3' ss Score
9.88
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
TGTTGGTGAACGCCCTTCTTGTCATCTGTAGTTTCATTAAAATTGTTTTGTCCCTCAAGTTCCAATTAGAATCGAACTAGGCTCGTGACAAAATGTCTTAT
Seq A exon
GGACAAGGCTATAACCCGTATGCCCAGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAATGCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGACCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATGGGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAA
Seq C2 exon
GCATGTTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCTCTACAACTACATCAACCAATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033529-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.284 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(71.0=66.2)
C2:
PF134991=EF-hand_7=PD(27.5=70.4),PF134991=EF-hand_7=PU(3.2=7.4)
Main Inclusion Isoform:
FBpp0087367
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTGAACGCCCTTCTTG
R:
CAGCCATTGGTTGATGTAGTTGT
Band lengths:
181-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)