MmuEX6096417 @ mm9
Exon Skipping
Gene
ENSMUSG00000028779 | Pef1
Description
penta-EF hand domain containing 1 [Source:MGI Symbol;Acc:MGI:1915148]
Coordinates
chr4:129798412-129803041:+
Coord C1 exon
chr4:129798412-129798685
Coord A exon
chr4:129802307-129802462
Coord C2 exon
chr4:129802898-129803041
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTCACATCCCTTTCTCCAGGTG
3' ss Score
8.87
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
AGTTGCCCAGGAGCTGCAGGACAGGTGCCTGGAGTACCCCCGGGGGGCTATTATCCTGGTCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACTGCCCCCAGGTGGTGGCTATGGAGCTCCTGCCCCTGGAGGACCCTATGGATACCCCAGTGCTGGAGGAGTCCCCTCGGGAACTCCAAGTGGACCATATGGCGGTATACCTCCAGGGGGTCCCTATGGTCAGCTACCTCCAGGGGGTCCCTACGGTACCCAGCCTGGACATTATGGACAGG
Seq A exon
GTGGTGTCCCCCCGAATGTGGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGATCACAGTGGCTATATCTCCCTCAAGGAGCTGAAGCAGGCCCTAGTCAACTCCAACTGGTCCTCATTCAATGACGAGACATGCCTCATGATGATAA
Seq C2 exon
ACATGTTTGACAAGACCAAGTCTGGCCGCATTGATGTCGCCGGCTTCTCAGCCTTATGGAAATTCCTCCAGCAGTGGAGGAACCTCTTTCAGCAGTATGACCGGGACCGCTCGGGCTCCATTAGCTCCACAGAGCTGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028779-'5-10,'5-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(71.4=94.3)
C2:
PF134991=EF-hand_7=PD(27.1=38.8),PF134991=EF-hand_7=PU(26.0=51.0)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCTGGTCCTCCCCATGG
R:
GGCCAGACTTGGTCTTGTCAA
Band lengths:
251-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: