Special

GgaEX1043006 @ galGal4

Exon Skipping

Gene
Description
penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30009]
Coordinates
chr23:4920109-4920778:-
Coord C1 exon
chr23:4920658-4920778
Coord A exon
chr23:4920423-4920578
Coord C2 exon
chr23:4920109-4920252
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCGGTGCCGTTTCTCCGCAGGCG
3' ss Score
11.46
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGCTATCCCGGCGCGGGCCAGGCCGGGCCCTACTCCGGAGGTCCTTACGGCGGCGGCGCGGCCCCCGGGCAGCCCTACGGAGCGCCCCCGGCGGGACCGTACGGAGGAGCCGCTCCCGGAG
Seq A exon
GCGGTGCCCCCCAGGGGGTGGACCCCGAGGCCTTCTCCTGGTTCCAGGCGGTGGACGCTGACCGCAGCGGTTACATCTCGGTGAAGGAGCTGAAACAGGCGCTGCTCAACTCCAACTGGTCGGCGTTCAACGACGAGACCTGCCTGCTGATGATCA
Seq C2 exon
ACATGTTTGACAGGACCAGGTCGGGACGCATAGATGTGTACGGCTTCGCAGCTCTGCTGCGCTTCATCCAGCAGTGGAAGAACCTCTTCCAGCAGTACGACAGGGACCAGTCGGGCTCCATCAGCTTCAGTGAGCTCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003215-'1-6,'1-2,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.780 A=0.057 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
PF134991=EF-hand_7=PU(71.4=94.3)
C2:
PF134991=EF-hand_7=PD(27.1=38.8),PF134991=EF-hand_7=PU(26.8=53.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGTCCTTACGGCGG
R:
CTTGCTGGAGCTCACTGAAGC
Band lengths:
230-386
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]