DreEX6073838 @ danRer10
Exon Skipping
Gene
ENSDARG00000023989 | pef1
Description
penta-EF-hand domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-259]
Coordinates
chr19:37535210-37540800:+
Coord C1 exon
chr19:37535210-37535471
Coord A exon
chr19:37540314-37540469
Coord C2 exon
chr19:37540657-37540800
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTTTATCCCTCTATTGCAGGTA
3' ss Score
11.4
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTTATTCGGGACCAGGGGGTAATGCTCCCCAGTGGCAGCAGCCTCCAAGGGCACCATATGCAGGTGGTCCTGCTGCTGGACAGTATGGTTCACCTTATGGCAGTGCCCCTCCAGGGCAACAGTATGGAGGAGGGTCTCCATATGGATCTTATGGTCAACCTGGTCCAAGAGCACCATACGGAGGGGGTCAAGCTCCAGGGGGTCCATACGGAGGTTATGGACAACCTCAAGGAGGACCATACCGTCAGCAGGGATCAGCAG
Seq A exon
GTAACGTTCCACCCGGTGTGAACCCTGAAGCCTACCAGTGGTTTTCAACAGTGGATTCAGACCAGAGTGGCTACATTAATGCAAAAGAGCTGAAGCAGGCACTCATGAACTTCAACAACTCCTCTTTCAATGACGAAACCTGCATTATGATGCTCA
Seq C2 exon
ATATGTTTGACAAGACTAAATCGGGCCGTGTGGATGTGTTTGGTTTCTCCGCATTGTGGACGTTTTTGCAGCAGTGGAGGGCAGCGTTCCAGCAGTTCGACCGTGACCGATCCGGATCAATCAACACCAATGAGATGCACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023989-'4-3,'4-1,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.208 C2=0.061
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(4.0=3.4)
A:
PF134991=EF-hand_7=FE(69.3=100)
C2:
PF134991=EF-hand_7=PD(25.3=38.8),PF134991=EF-hand_7=PU(25.5=49.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCACCTTATGGCAGTGC
R:
CACTGCTGCAAAAACGTCCAC
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]