GgaEX6047706 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29709565-29710011:+
Coord C1 exon
chrUn_random:29709565-29709681
Coord A exon
chrUn_random:29709762-29709797
Coord C2 exon
chrUn_random:29709904-29710011
Length
36 bp
Sequences
Splice sites
3' ss Seq
CAGTTCCTCCATTCCCACAGGGC
3' ss Score
8.27
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGAGCCGTGTGGACAGTGTCCCTCAGCTCCACAGGCACTGGAAGGGGCAGCAACAACGGTGGCTGTGCCCGGAGCACCGGGACCACAGGGCAGGGATGGTCCCCCTGGCAGAGCA
Seq A exon
GGCAAGCCTGGTGATGCTGGCCAGAAAGGGCAGAAG
Seq C2 exon
GGGGACGTGGGCAGCCCTGGGGACCCAGGCACACCGGGCACAGATGGACTGCCAGGGCTGTCGGGTGAGCCAGGCATCAGGGGTCCGGCCGGCCCCAAAGGCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022292-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(22.5=41.0),PF0139113=Collagen=PU(37.0=87.2)
A:
PF0139113=Collagen=FE(12.0=100)
C2:
PF0139113=Collagen=FE(38.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGGGGCAGCAACAAC
R:
AGTCCATCTGTGCCCGGTG
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]