BtaEX6012364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122574200-122575453:+
Coord C1 exon
chr2:122574200-122574331
Coord A exon
chr2:122575103-122575138
Coord C2 exon
chr2:122575346-122575453
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGGAAATGCTTTCTCCTCAGGGC
3' ss Score
8.32
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGGAGCCTTGTGAGCCATGCAGAGCCCTGACCGAGCATCAGGATGAAGACAGCCACGTGGTGGCCTTGCCGGGGCCCCGCGGAGAGAAGGGGGAGCCCGGGCCTCCAGGTTTCGGTCTGCCAGGAAAACAG
Seq A exon
GGCAAGGCTGGAGAGCGTGGACTGAAGGGGCAAAAG
Seq C2 exon
GGTGATGCTGGGAATCCTGGAGACCCTGGAACACCAGGCATCACGGGGCGGCCAGGACTGTCGGGAGAGCCAGGGGTTCGGGGCCCTGTGGGGCCAAAAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'39-43,'39-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.4=18.2),PF0139113=Collagen=PU(40.7=50.0),PF0139113=Collagen=PU(9.5=13.6)
A:
PF0139113=Collagen=FE(20.4=100),PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=PD(33.3=50.0),PF0139113=Collagen=FE(55.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGTCTGCCAGGAAAACAG
R:
TTTCTCCTTTTGGCCCCACAG
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]