GgaEX6048437 @ galGal3
Exon Skipping
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60651425-60652236:+
Coord C1 exon
chrUn_random:60651425-60651584
Coord A exon
chrUn_random:60651615-60651698
Coord C2 exon
chrUn_random:60652130-60652236
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACAGCCGTCTGTCCCTGCAGTTG
3' ss Score
9.47
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAGATGCAGCCACTGCGGCTCTTCCCGCAGCCCAGCCACGCCACCCGCACCAGCCCTGTCCGCCATGGCAAGCGGGGGCTCGGCGCTGCTGAGGAGGGAAGGGAGAGACCAACGGAGCTGAGTAAGGTTCTGGACTCCCCCTGCCCCCACCCTACAGCAG
Seq A exon
TTGAGCCACTGAAAGCCGGAGTTCTGGATGCCCCTGCACCACCACTGCTGAGCCGCTGCATCTCCATGCCAGTGGATATCTCTG
Seq C2 exon
GCATCCAGAAGGGTCCCCGCTCTGACTTTGACATGGCCTACGAGCGCGGACGCATCTCAGTATCGCTGCAGGAGGACAGCACCAGCCCCCTGGCTGCCTTCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881-'7-6,'7-5,8-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=0.172 C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGGAAGGGAGAGAC
R:
AGAGAAGGCAGCCAGGGG
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]