MmuEX6034105 @ mm9
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3522759-3523867:+
Coord C1 exon
chr8:3522759-3522924
Coord A exon
chr8:3523258-3523341
Coord C2 exon
chr8:3523758-3523867
Length
84 bp
Sequences
Splice sites
3' ss Seq
GAGCATTCGTCTCTCCCCAGGGG
3' ss Score
8.51
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GAGATCCAGCCCCTACGCCTTTTCCCCAGCCCCGGCCTCCCGACCCGAACCAGCCCTGTCCGTGGCTCTAAACGGGTAGTCAGCACCTCAGGTACTGAGGACACCTCAAAGGAGACCTCTGGCCGGCCCCTGGACTCCATTGGAGCTCCTCTGCCTGGACCTGCAG
Seq A exon
GGGATCCCGTGAAGCCCACATCCTTAGAAGCACCCCCAGCCCCGTTACTGAGCCGCTGCATCTCCATGCCAGTAGACATCTCAG
Seq C2 exon
GCTTGCAAGGTGGCCCTCGTTCTGATTTTGACATGGCCTATGAACGTGGACGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAGACAGCATCCCCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-'17-14,'17-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.448 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAAAGGAGACCTCTGGC
R:
CTAGGGGATGCTGTCTGAGGT
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: