BtaEX0027730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17629252-17630716:+
Coord C1 exon
chr7:17629252-17629423
Coord A exon
chr7:17629976-17630059
Coord C2 exon
chr7:17630607-17630716
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAAATATATGTCTCCTCCAGGGG
3' ss Score
8.57
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GAGATCCAGCCACTGCGCCTCTTCCCTAGCCCGGGCCTCCCACCCCGCACCAGCCCAGTGCGTGGCTCCAAGCGGATGGTCAGCACTGTGGCCTCAGAGGAGCTGAGGGAGACCCCTGGCCGGCCGTCTGACCCCACTGGGGCCCCACTGCCCGGGACTGGAGGTACCCAAG
Seq A exon
GGGACCCAGTGAAGCCCACATCCCTGGAAACCTCCTCAGCCCCCTTGCTGAGTCGCTGCATCTCCATGCCAGTGGATATCTCAG
Seq C2 exon
GCTTGCAGGGTGGGCCCCGCTCAGACTTCGACATGGCATATGAACGGGGCCGAATCTCTGTGTCCCTGCAAGAAGAGGCCTCAGGAGGGTTCCAGGCAGCCTCAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-'19-16,'19-15,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=0.448 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGATGGTCAGCACTG
R:
CCTCTTCTTGCAGGGACACAG
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development