RnoEX0067711 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2077198-2095717:+
Coord C1 exon
chr12:2077198-2077363
Coord A exon
chr12:2077575-2077658
Coord C2 exon
chr12:2095416-2095717
Length
84 bp
Sequences
Splice sites
3' ss Seq
GAGCGTTTGTCTCTCCCCAGGGG
3' ss Score
9.7
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GAGATCCAGCCCCTACGCTTGTTCCCCAGCCCTGGCCTCCCGACCCGAACCAGCCCTGTCCGTGGCTCTAAACGGGTAGTCAGTACCTCAGGTACCGAGGACACCCCGAAGGAGACCTCTGGCCGGCCCCTTGACCCCACTGGAGCGCCACTGCCTGGACCTGCAG
Seq A exon
GGGATCCTGTGAAGCCCACATCCTTAGAAGCGCCCTCAGCCCCCCTACTGAGCCGCTGCATCTCCATGCCAGTGGACATCTCAG
Seq C2 exon
CGGATATCGCCCGCAGCATGGGGGCCAAAACGGTCATTGCCATCGACGTGGGAAGCCAGGATGAGACGGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAACGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCCTGGCGTATGTGTCCTGTGTGCGGCAGCTGGAAGTTGTCAAGTCTAGTTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977_MULTIEX1-10/31=9-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.345 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0173417=Patatin=PD(2.4=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCAGGTACCGAGGACAC
R:
CTGTCCCCATAGGTGCTGAGA
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]