DreEX6032895 @ danRer10
Exon Skipping
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45206136-45210128:-
Coord C1 exon
chr1:45209999-45210128
Coord A exon
chr1:45208012-45208086
Coord C2 exon
chr1:45206136-45206230
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATGATGCTCTGTGTCTGCAGGTG
3' ss Score
10.65
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAAATGCAGCCTCGTTCCTCTCCCCTCTCTCCTCATCCGACTCGCTCCAGTCCTGTACGACACAGCAAACGCTTCGGCAGTCTGACTGTTCCTGACAAACACCGTGAGGCGGCTGTCCAAAATGCTACTG
Seq A exon
GTGGGGATCATGGGAAGGAGGGTGGCACAATTCCGACCCTTAGTAGAACCATATCAATGCCTGTAGACATTGCTG
Seq C2 exon
GAATGCAGAAGAGTCTGCGTTCAGATTTCGACATGGCGTATGAAAGAGGTCGTATCTCTGTATCTGCAGAGGATGGAGTGCCTGCTTTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=0.538 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGACACAGCAAACGCTT
R:
TGTGAAAGCAGGCACTCCATC
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]