GgaEX6048741 @ galGal3
Exon Skipping
Gene
ENSGALG00000001900 | KIAA1045
Description
NA
Coordinates
chrZ:7895934-7897167:+
Coord C1 exon
chrZ:7895934-7896100
Coord A exon
chrZ:7896241-7896342
Coord C2 exon
chrZ:7896455-7897167
Length
102 bp
Sequences
Splice sites
3' ss Seq
GGCACTCTGTCACCCTGCAGCAT
3' ss Score
7.57
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACTCCCTGCTGCGGCTGCTGACAGTCAAGGAGCGGGAGCGGGCACGCGCCACCTTCCTGGCCCTGGACCAGGATGGCAGTGGCTTCATCGGGGAGGGTGAGTGCCACAAGGCCCAGCACGCCTGGTTCCGCAAGCACCAAAAGGAGACACCATCCTGCAATGTCAG
Seq A exon
CATCAGCCATGTTGGGCCCATGTCAGAGAGCAGCCCGGCCAGCAGCGGCAGTGTCAAGAGCCAGGAGAAGACACTGCTGGCGTCGGAGCAGGAGGAGGCCAG
Seq C2 exon
GCCCATCGACTGGCCCAGATTCCTGAGGGAGAATGTCGCCTACATCCTGGCAGCCCGTCCCAACAGTGCCGCCATCCACCTGCAGCCGCTGGCCTAGTTCCCGGCCTACCCACCCCGGCGCCATCTTGGTTGGCGAGGCCTCCCCTGCCGCCCTGCAGAGAGCCCCGTTGCCATGGCGACCGGACCCGCACCCCATTGGCTGAGGGAAGTACCTCCCCCTTTGCTCCACCTGCCAACCCCACGCAGCTCTCCACCCTCTGCCAGTGGGGAGCCAGCAGCTGATTGGCTGTTGGGAAAGCAGCAGCTCCCCCTTTCCCCTTGCCTCAGTGTTGGATTTGCTGGGTGACGCCCGAGGGGGGTGGGTGCGGGCTGTGATTACCACAGCAGGTCCTGCCTTGGATGCAGCGCTCTGATTGGCTGGGGGATGCCTCTGGTGCCCTGGAGGCCCTGCAGTGGGGAGGCCCTGGAGGCCGTGGGGCAGAGGAGGGCTCTACCGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001900-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.857 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=WD(100=57.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACACCATCCTGCAATGT
R:
GGAGCAAAGGGGGAGGTACTT
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]