DreEX6087761 @ danRer10
Exon Skipping
Gene
ENSDARG00000077596 | si:ch211-269m17.1
Description
si:ch211-269m17.1 [Source:ZFIN;Acc:ZDB-GENE-091204-154]
Coordinates
chr10:17957616-17968571:+
Coord C1 exon
chr10:17957616-17957651
Coord A exon
chr10:17958576-17958665
Coord C2 exon
chr10:17964962-17968571
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTCTTCACCTGCAGTAT
3' ss Score
9.88
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTCATGGGATTGTGTTCCCCTTTGTTCAGTATGGG
Seq A exon
TATCAGCCATGTTGGGCCAATATCTGAAAGCAGTCCTGCCAGCTCCAGCAGCGAGAGAAGCAGGGATAAAGCCATGGAGAGTGACAACAG
Seq C2 exon
ACCTGTTACCTGGGACAACTTCCTGAAGGAGAGTGCTATCTACATTCTAGCAGCAAGGCCCAACAGTTCAGCCATGCACATCCGATTGCCACTCTAACCACGGCCACACAGCCTAAGACTTCCAGAGGGGCTTCCCGGGTCCAGATTCACGAGAAAGCGGTGCTGAGGACTTAACCGAGAGTCACACGAAAGTCGAAAGCAAATGAGTACCCCACCACACTCAAAGACCGTACAAGCCATTGACGGATCCTTCCTGTAATAACACAGTCTAGCAACACATTGACAAATCCAATGCTCTTGAACAATTGCACATATATCACCACTTCAGAGTTGAGCTTTGACGAGCTTGTATTTTGTGACCAAGTAACTGTTCCGATCAGAGAACCTGCTGCGATTTAAACACTGTCACACATTAGCAAAATTACAGCACCCGTATTTGCATAGTGTTTTTGATGTTAATGTGTCGTACCATTTTTTGGGATTGCGGCTCTAGCTGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077596-'9-8,'9-7,10-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.710 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCCTTTGTTCAGTATGGG
R:
CCGCTTTCTCGTGAATCTGGA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]