Special

MmuEX6092909 @ mm9

Exon Skipping

Gene
Description
expressed sequence N28178 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42951487-42957624:+
Coord C1 exon
chr4:42951487-42951647
Coord A exon
chr4:42951958-42952053
Coord C2 exon
chr4:42952377-42957624
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTTGTGTCTGGCAGCAT
3' ss Score
8.33
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AACTCTCTCTTGAGGCTCCTTACTGTCAAGGAGAGGGAACGAGCCCGAGCCACCTTCCTGGCACGGGGCAGAGGGAGCACCATCAGCGAGGCGGAGTGCCACCATGCCCGGCATTCTTGGTTCTGTAAACGCCTTACAGAGGCTCCTTCCTGCAGTGTCAG
Seq A exon
CATCAGCCATGTTGGGCCTATAGCAGACAGCAGCCCAGCTGCCAGCAGCAGCAAGAGTCAGGAGAAGGCCCTGCTGCCCACAGAGCAGGAGTCCAG
Seq C2 exon
ATACGTGGATTGGCCCACCTTCCTAAGAGAGAACGTCATCTACATCTTGGCTGCTCGTCCTAACAGCGGAGCGATCCACCTGAAGCCCCCAGGATAGGTGGGACAGAGAAGCTCAGTTCTGGGACGGTGGCATCCTCTCTCTCTCTCTCTCTTTCCTTTCTTTTTCCTTTACCAACCTCTGGCACTGAGACTCATGGGAATGGGACACTGCCAACATCTTAATTTGTCATTAAGCTTTATGGCACTGAAGCCACCGTTCCCCTCACAACCGAGGCAGTATTGCCATAGTGAGAGGCCCCAAGAGCTGTGGCATTACCTGCTATGGATCACCTCCTGCCCGCACATCATAAAACTACCTGCCACCTCACGCATACGTGTGTGCACATGCGCATACAACCACATACATGCCTAGACATCCATGCCTTCAAACTCCTTTGGTTCTTTCTTTGATGAAAAAGGACCAAAAGCCTTTTGTTGAGCCCCCCTGGTTTAGATAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.473 C2=0.186
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCAAGGAGAGGGAACGA
R:
CTCTCTTAGGAAGGTGGGCCA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]