MmuEX6092909 @ mm9
Exon Skipping
Gene
ENSMUSG00000036062 | N28178
Description
expressed sequence N28178 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42951487-42957624:+
Coord C1 exon
chr4:42951487-42951647
Coord A exon
chr4:42951958-42952053
Coord C2 exon
chr4:42952377-42957624
Length
96 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTTGTGTCTGGCAGCAT
3' ss Score
8.33
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AACTCTCTCTTGAGGCTCCTTACTGTCAAGGAGAGGGAACGAGCCCGAGCCACCTTCCTGGCACGGGGCAGAGGGAGCACCATCAGCGAGGCGGAGTGCCACCATGCCCGGCATTCTTGGTTCTGTAAACGCCTTACAGAGGCTCCTTCCTGCAGTGTCAG
Seq A exon
CATCAGCCATGTTGGGCCTATAGCAGACAGCAGCCCAGCTGCCAGCAGCAGCAAGAGTCAGGAGAAGGCCCTGCTGCCCACAGAGCAGGAGTCCAG
Seq C2 exon
ATACGTGGATTGGCCCACCTTCCTAAGAGAGAACGTCATCTACATCTTGGCTGCTCGTCCTAACAGCGGAGCGATCCACCTGAAGCCCCCAGGATAGGTGGGACAGAGAAGCTCAGTTCTGGGACGGTGGCATCCTCTCTCTCTCTCTCTCTTTCCTTTCTTTTTCCTTTACCAACCTCTGGCACTGAGACTCATGGGAATGGGACACTGCCAACATCTTAATTTGTCATTAAGCTTTATGGCACTGAAGCCACCGTTCCCCTCACAACCGAGGCAGTATTGCCATAGTGAGAGGCCCCAAGAGCTGTGGCATTACCTGCTATGGATCACCTCCTGCCCGCACATCATAAAACTACCTGCCACCTCACGCATACGTGTGTGCACATGCGCATACAACCACATACATGCCTAGACATCCATGCCTTCAAACTCCTTTGGTTCTTTCTTTGATGAAAAAGGACCAAAAGCCTTTTGTTGAGCCCCCCTGGTTTAGATAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.473 C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCAAGGAGAGGGAACGA
R:
CTCTCTTAGGAAGGTGGGCCA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: