HsaEX6061059 @ hg19
Exon Skipping
Gene
ENSG00000122733 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:29180]
Coordinates
chr9:34977080-34978894:+
Coord C1 exon
chr9:34977080-34977240
Coord A exon
chr9:34977543-34977638
Coord C2 exon
chr9:34978012-34978894
Length
96 bp
Sequences
Splice sites
3' ss Seq
CGTGTCCTCATGCCCAGCAGCAT
3' ss Score
4.24
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AACTCTCTGTTGAGGCTTCTGACAGTGAAGGAGCGGGAGCGAGCCCGAGCCGCCTTCCTGGCTCGGGGCAGTGGGAGCACCGTCAGTGAGGCAGAGTGCCGCCGGGCCCAGCACTCTTGGTTTTGCAAACGGTTCCCAGAGGCTCCTTCCTGCAGTGTCAG
Seq A exon
CATCAGCCATGTGGGTCCCATCGCAGATAGCAGCCCAGCCAGCAGCAGCAGCAAGAGTCAGGACAAGACCCTGCTGCCCACAGAGCAGGAGTCCAG
Seq C2 exon
ATTTGTGGACTGGCCTACCTTCCTGCAAGAGAATGTCCTCTACATCCTGGCTGCTCGCCCCAACAGCGCAGCCATTCACCTGAAGCCCCCAGGATAGCATGGAGCAGAGAAGCTCGGTTTGAGGACAGTGACATCCTCTCCCTCCTTTCCTTTCTCCCTTCCCCCACCAACCTCTGGCACAGAGACTCATGGGGTTGGGACACTGCCAGCGTCTTAACTTGTCACTAAGCTTTAAGGCACTGAAATCACCATTCCCCTCACAATAGAGGCAGTGAATGCATTGCCACAAGGAGAAGCCCTGGGAGCTGTGGCAGCATCCTCTCCTGGACCGCCCCTGCCCCACATCATAGACGGGACCTGCCACCACACTTATATACATGTGCACATGCTGCCCAGCTGTCCATGCCTTCAGAAGCCTGGTTCTTTTTGGTTGAGAAAGGACCAAAGTCCCTTTGTGAAGCCCCTGGTATAGAGGAGGGGGTCTCTACTCACCCCTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.545 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGCAAACGGTTCCCAG
R:
GTCACTGTCCTCAAACCGAGC
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)